rs28279075 SNP Detail

Summary

• ID
  rs28279075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163138979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGCAG GGGCCATGGG
  GATCAAGGAG AGAGAACGCA GGTTCTGAAG GACTGCAGGT AACCTGTTGC CTGGACGAGC
  ATCATGTAAG CTAGCAACAT CTGGCCACTG ACCGTTGGAT GCTGGGAGCC AGTGATGTGC
  TTCATCCACT GAGCCTTGCC CCACAGGCCA GCTCTCCCCA GAGAGCCTTT GCTACTTAAT
  K
  TTTGGCCAAT TAGGCAGTAG GAATCACCCC AGAACACGGA GTCCTGCCTG TGCCTGGGAT
  CCACTCTGTG TCTTCAGGAG ACTTTTTACC CTCCACAGCC CTGGGCCTCC CTCCACCCTC
  TTTAGATGTG AAGCCACTGA GCCCCATCCC TGTAGCCCCA GAGAGGCTTT CCGGACTCCT
  GTCCCTCCTG CCTCCCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37522009	NES08865854	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279075					SNP	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522009	NES08865854	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163138979 () rs orientation: forward

Symbol	Name	Function Class
Rr569324	regulatory region 569324	within coordinates
Rr569325	regulatory region 569325	1321 bp proximal
Tox2	TOX high mobility group box family member 2	Intron