rs28277386 SNP Detail

Summary

• ID
  rs28277386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164657876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGGAT TAGATGAAAT
  TATGATTGTG TCCGTCCCCC TCCACACACA CACACAAACA TGTCAGGAGG TGGGTAGGCT
  CTGGGATGCC CCTCACACAC ATGTCAGGAG GTGGGTAGGC TCTGGAATGC CCCTCACACA
  GCAAAACCAT TGGCCTCTCA AGCCTCTGAT CTAAAGTGGC ATAGTTCTCA CATATACTGT
  Y
  CGCGTAACCG CCGCCGTGCA CCGTGGAGAT AGCCATTATA GTGCACTCTA GTGACTAGTG
  ATAAGGGAAG CATCTGTCTA TTTTCAGAAC AAGTACAAAC TGGTTTTGTT TCTCGTTTTT
  TGGTTGTATT GGGGATTAAA CCTAGGGCTT CATACAATCA AGATAAGGAG GGTTCTACCA
  CTGAGCTGTA TAGCTCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37516128	NES08883608	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28277386					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516128	NES08883608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164657876 () rs orientation: forward

Symbol	Name	Function Class
Rr569717	regulatory region 569717	356 bp distal
Rr569718	regulatory region 569718	within coordinates
Rr569719	regulatory region 569719	38 bp proximal
Rr569720	regulatory region 569720	1757 bp proximal
Rr569721	regulatory region 569721	1769 bp proximal
Rr569722	regulatory region 569722	1843 bp proximal
Zswim3	zinc finger SWIM-type containing 3	Intron