rs28277384 SNP Detail

Summary

• ID
  rs28277384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164659071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGATGT GCTGGTATTG
  GCTAGCAGAG TAAATCTTAG ATGCTCATAC TCCATATAGA TCCCCCTTAT AGCCATCTCC
  CTCTGTAAAA TGAGGACAAA CTAGAATTCT TGCTAGTGTG AACTTAGCAG GATCTTCTAT
  GCATGTAGTG ACACTGGGGC AGCATCTAAA GTCTTGTTGT GCACATAGTA GGTACAGGTT
  R
  GAGTCAGGCC GCTGGCAGAA TAGCAGCCTC GCTGTGCAAA GGCCTAGGTT CAATCCCTAG
  CACAGTGGGA AAGAAAAGAA GGGAGGAAGA TGCTGGGCAA GGCCGTCGTG CCTGGAATTC
  AGCACTCAGT AGGCAAAGAC AGGAAGATGG CCATGAAGTG AGGCCCTGTT CCCCACCCCC
  AAAGATAGAA GCAAGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516126	NES08883558	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277384					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516126	NES08883558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164659071 () rs orientation: forward

Symbol	Name	Function Class
Rr569717	regulatory region 569717	1551 bp distal
Rr569718	regulatory region 569718	956 bp distal
Rr569719	regulatory region 569719	1136 bp distal
Rr569720	regulatory region 569720	562 bp proximal
Rr569721	regulatory region 569721	574 bp proximal
Rr569722	regulatory region 569722	648 bp proximal
Zswim3	zinc finger SWIM-type containing 3	Intron