rs28277383 SNP Detail

Summary

• ID
  rs28277383
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164659390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCACTCA GTAGGCAAAG
  ACAGGAAGAT GGCCATGAAG TGAGGCCCTG TTCCCCACCC CCAAAGATAG AAGCAAGGAA
  AGGAGGGAAT CTGGATAAAG AATGAGAAGG AAGAATTCAA AGAATGCCCA GGACTCCAAG
  CTGACTGTGT AGTAGAGTTA GGAATAGGGA AAAAAAGCTT TGTGGTTGGC AATGGCTTCC
  S
  GAAACTGTCA CTAAATACAC AGCAATCGAT GTAATCAGAT GACTAGAGGG GGGCTAAGAT
  GTTGAGCTAG CAGAAGGGTA GGACCTGGCT TTCTAGAAAA GATGATGGCT CCGTGCATCC
  TGAACGGTGA ATGTGCTCTG AGATGAAGAG TGGGAGGGTC TTTCAAACAA AGGGACAAAC
  ATAAGCCACT GCCAGAAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516125	NES08883549	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G		G		G	G	C	G
ss148232056	ENSMUSSNP6114359	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277383					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516125	NES08883549	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164659390 () rs orientation: forward

Symbol	Name	Function Class
Rr569717	regulatory region 569717	1870 bp distal
Rr569718	regulatory region 569718	1275 bp distal
Rr569719	regulatory region 569719	1455 bp distal
Rr569720	regulatory region 569720	243 bp proximal
Rr569721	regulatory region 569721	255 bp proximal
Rr569722	regulatory region 569722	329 bp proximal
Zswim3	zinc finger SWIM-type containing 3	Intron