rs28277379 SNP Detail

Summary

• ID
  rs28277379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164661477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGGGCC TTTAGGCCAG
  GTATAGTACA TAGCTCACTT TTGTAACCGC AGTTCATGGG AGGTAGAGCC AGCAAGGCTG
  TGGCAAGTTC AAGGCCAGCT GGGACTACAT CATGAGCTCC CTTCCACTCC CCAAACTAAA
  AAAAAAAAAA AAAGAACCAA CACAAATACA AACAAATAGA TAAGCTTGTA GAAGAAACTA
  W
  GGGGTGTTGT AATAGGGACA GTCTTGAAGG GGGAGCCGAA AGTGCTGTGA CTACAGAGTC
  ACTGCACATT CTTCTCCTCA CACTCTAGAC GGCTTTGTGG TCTCTAAGAA ATGTATTGGT
  CAATATAAAT GGCTACCAGG TCTTATCTTA CAAGAGGGGC AACCAGCACC TTTCTCATTG
  TCACCTCTAC CTTCCCTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516121	NES08883500	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277379					SNP	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516121	NES08883500	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164661477 () rs orientation: forward

Symbol	Name	Function Class
Gm75078	predicted gene, 75078	283 bp downstream
Rr569720	regulatory region 569720	1823 bp distal
Rr569721	regulatory region 569721	1458 bp distal
Rr569722	regulatory region 569722	1737 bp distal
Tssr27543	transcription start site region 27543	1538 bp downstream
Zswim3	zinc finger SWIM-type containing 3	Intron