rs28272783 SNP Detail

Summary

• ID
  rs28272783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117770571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCATTGG GACTTCATGC
  AGAGAGAAAA CAATGGCTCA TCTCCCTGGC AGCACATGAA ACCAACCATG TGCCACCATG
  CCAACACTGT CCAGCCCCAA GGGCCAGCCA GGTTCCCTAA ATGGACTCCA TCCAACTAGG
  ATTAACCAAA TCTGTACCCT CCCGCCCCCT GAAAGCCAGT TATGGCTACT GTCCCTTGTA
  Y
  AGCCAGCCAC TCAAGGAAGC AAAAGGAGAC AAGAGACCGA ACAAGAAGAT ATGTGTTCTC
  AACATTTGTT AGGTAAACAA GCCTCAAGAA CAACAAATGT TTTTCTATGA CTGCCCCTTG
  CTATCCAGTA GGATACCCCT ACCTCTCGGA TCATCCTTGG GAGTATTGGG GGTGGGGCGG
  GTGCATTCCT GCATTCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37690711	NES09202647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28272783					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690711	NES09202647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117770571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ipo13	importin 13			Intron
				Noncoding-Transcript-Variant
Rr398419	regulatory region 398419			1740 bp upstream
Rr598257	regulatory region 598257			152 bp proximal
Rr598258	regulatory region 598258			1572 bp proximal
Rr598259	regulatory region 598259			1615 bp proximal
Tssr43010	transcription start site region 43010			1327 bp downstream
Tssr43011	transcription start site region 43011			1566 bp downstream
Tssr43012	transcription start site region 43012			1594 bp downstream
Tssr43013	transcription start site region 43013			1662 bp downstream
Tssr43014	transcription start site region 43014			1755 bp downstream
Tssr43015	transcription start site region 43015			1819 bp downstream