rs28272782 SNP Detail

Summary

• ID
  rs28272782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117770949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGCATT CCTGCATTCC
  AGGCTGCTGG GAGAAGAATA GAATAGAAAA AGATGGCCTG GGCAATGGAG AAGTCTGGAA
  GGAGGCCATG GCAGAAAGCC ATGTGGGCAG GTAAGGAAGG AAGGGCCCTG TAAAGTTGCC
  AGCAGAGCCA AGCCCCTTGG ACCCAGCACA AAACAAGAGA GCCAGGCACA CTCCTGCCTG
  Y
  CCAGGACCGG TTTGACTTCC ATCCAATAAG GAAAAGACCC TTTCTGAAGA TAAATGAACA
  TATAACTCAG ACGGGTTTAG CTCCAGATAT CTTTGTGAGC CTTTGACTGA AAAAAAGTGA
  GTCGGGTCCA GGATCATTCA GCATCCGTGT GGTTTCTAAC GTGGGGGTGG GGGTGGCTGA
  GTGGCAGGTC TTGTGAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690710	NES09202648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690710	NES09202648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117770949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14673	CpG island 14673			1420 bp distal
Cpgi14674	CpG island 14674			552 bp proximal
Ipo13	importin 13			Intron
				Noncoding-Transcript-Variant
Rr398419	regulatory region 398419			1362 bp upstream
Rr598257	regulatory region 598257			within coordinates
Rr598258	regulatory region 598258			1194 bp proximal
Rr598259	regulatory region 598259			1237 bp proximal
Tssr43010	transcription start site region 43010			949 bp downstream
Tssr43011	transcription start site region 43011			1188 bp downstream
Tssr43012	transcription start site region 43012			1216 bp downstream
Tssr43013	transcription start site region 43013			1284 bp downstream
Tssr43014	transcription start site region 43014			1377 bp downstream
Tssr43015	transcription start site region 43015			1441 bp downstream