rs28272781 SNP Detail

Summary

• ID
  rs28272781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117771096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGG TCCAGGATCA TTCAGCATCC
  R
  TGTGGTTTCT AACGTGGGGG TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37690709	NES09202649	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A		G	G	A	A		G	A	A		A
ss45636399	mCV25045959	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss147295285	ENSMUSSNP5176199	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321280713	CHEV_4_117586504	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28272781					SNP	A	A	G	A	A	A	G	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690709	NES09202649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117771096 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14673	CpG island 14673			1567 bp distal
Cpgi14674	CpG island 14674			405 bp proximal
Ipo13	importin 13			Intron
				Noncoding-Transcript-Variant
Rr398419	regulatory region 398419			1215 bp upstream
Rr598257	regulatory region 598257			within coordinates
Rr598258	regulatory region 598258			1047 bp proximal
Rr598259	regulatory region 598259			1090 bp proximal
Tssr43010	transcription start site region 43010			802 bp downstream
Tssr43011	transcription start site region 43011			1041 bp downstream
Tssr43012	transcription start site region 43012			1069 bp downstream
Tssr43013	transcription start site region 43013			1137 bp downstream
Tssr43014	transcription start site region 43014			1230 bp downstream
Tssr43015	transcription start site region 43015			1294 bp downstream