rs28272778 SNP Detail

Summary

• ID
  rs28272778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117772331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCGCGA TCTGTTCGCC
  TCCCGGCGTT GGCCCCGCTA CGGTCGCTGC CTCCGCCCCA GTGACTGACA GACAGGCCGG
  CCCGGCCGGG ACGGGGCGGG GACCTCAGCA AGACTCGGGC TGTCCCGAGC GCCTGTCGCC
  AGTACCACCA ACTTAGGCCC CCACCCACGC TTGTCCTGGC CCGGCACGGC CAAGCACATC
  S
  AGACACGGCA CGGCGGAACT ACGCGGAAAC TCATTCCGGG TCTTTGGCCC TGTCCTCGTG
  CTAGCTCGCG CGCCCCCGAA CAGGCGACGG AACGGCACAC CGCCAGGGGC CCCTGCCTGA
  AGCAAGGACC CGCCTCTATG CACCCTGGGA AATGTAGTTT TCGTCGGACC GGAAGGTGGC
  TCCTGAGGAG GGAGGCTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690706	NES09202652	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272778					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690706	NES09202652	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117772331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14674	CpG island 14674			within coordinates
Ipo13	importin 13			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398419	regulatory region 398419			within coordinates
Rr598257	regulatory region 598257			146 bp distal
Rr598258	regulatory region 598258			167 bp distal
Rr598259	regulatory region 598259			within coordinates
Tssr43010	transcription start site region 43010			422 bp upstream
Tssr43011	transcription start site region 43011			177 bp upstream
Tssr43012	transcription start site region 43012			116 bp upstream
Tssr43013	transcription start site region 43013			80 bp upstream
Tssr43014	transcription start site region 43014			within coordinates
Tssr43015	transcription start site region 43015			59 bp downstream