rs28272776 SNP Detail

Summary

• ID
  rs28272776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117772574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA TGGAACCCTA TCCTATTCTC
  R
  GCTTAGGGCA GAGGACCATC TTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690704	NES09202654	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	G	G	A	A		G	A	A	G		A
ss45616442	mCV25045946	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss147295298	ENSMUSSNP3723192	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321280714	CHEV_4_117587982	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28272776					SNP	A	A	G	A	A	A	A	G	G	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690704	NES09202654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117772574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	within coordinates
Ipo13	importin 13	378 bp upstream
Rr398419	regulatory region 398419	within coordinates
Rr598257	regulatory region 598257	389 bp distal
Rr598258	regulatory region 598258	410 bp distal
Rr598259	regulatory region 598259	within coordinates
Tssr43010	transcription start site region 43010	665 bp upstream
Tssr43011	transcription start site region 43011	420 bp upstream
Tssr43012	transcription start site region 43012	359 bp upstream
Tssr43013	transcription start site region 43013	323 bp upstream
Tssr43014	transcription start site region 43014	202 bp upstream
Tssr43015	transcription start site region 43015	179 bp upstream