rs28272774 SNP Detail

Summary

• ID
  rs28272774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117773228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTACCTC TTTAATCCCA
  GCACTCCCGG GATTACAGGA GTGTGCCACC AAGATGGGTG TCTGAAGTGC TGTGCCTCCC
  GCGCACCCTG TCAACTGAAC CACATCCTCC ACCTTCTTTG TTTTCAAGCG GGGATCTCAC
  TATGTAGCCC GGGCTTGAGT GGGTATTTTT ATTCATTGTC TTCAGCTAAA ATGGGGAAAT
  Y
  GAGGTTGGAG GAAGGCAAGC CCTGCTCCCA GCAGGCACTT CCTCTCCATG CTCAACTTTT
  TCTTTCCTTG ACTCCTGTCA GCAGGAAAGG AAATGATTTC AAACAGAAGG ATCTTTCTTT
  TTCTTTTCTT TTCTTTTTTT CCAAGACAGG GTTTCTCTGT GAGGCCCTGG CTATCTTGAA
  ACTCTGTAGA CCAGGCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37690702	NES09202656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28272774					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690702	NES09202656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117773228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	518 bp distal
Ipo13	importin 13	1032 bp upstream
Rr398419	regulatory region 398419	617 bp downstream
Rr598257	regulatory region 598257	1043 bp distal
Rr598258	regulatory region 598258	1064 bp distal
Rr598259	regulatory region 598259	542 bp distal
Tssr43010	transcription start site region 43010	1319 bp upstream
Tssr43011	transcription start site region 43011	1074 bp upstream
Tssr43012	transcription start site region 43012	1013 bp upstream
Tssr43013	transcription start site region 43013	977 bp upstream
Tssr43014	transcription start site region 43014	856 bp upstream
Tssr43015	transcription start site region 43015	833 bp upstream