rs28272773 SNP Detail

Summary

• ID
  rs28272773
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117773810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTATACAG GGCTTTACAT GTGTCCCACC ACACCAGGTG
  ACACTTGTGC TCTAAGGGAG GAAGCTGGCT CTGGAAGTAG CTGCTGAGGC CAGAGAAGGT
  M
  GAAGAAACTT GACAAGATCT TGACGAATCC TCAAAGCCTG GGAAGGAGAA GGACTCACTT
  GGCTGCTAGA GGAAGTCCAT CCATCACAAT GAGTCAGCAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690701	NES09202491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272773					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690701	NES09202491	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117773810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	1100 bp distal
Ipo13	importin 13	1614 bp upstream
Rr398419	regulatory region 398419	1199 bp downstream
Rr598257	regulatory region 598257	1625 bp distal
Rr598258	regulatory region 598258	1646 bp distal
Rr598259	regulatory region 598259	1124 bp distal
Rr598260	regulatory region 598260	1760 bp proximal
Tssr43010	transcription start site region 43010	1901 bp upstream
Tssr43011	transcription start site region 43011	1656 bp upstream
Tssr43012	transcription start site region 43012	1595 bp upstream
Tssr43013	transcription start site region 43013	1559 bp upstream
Tssr43014	transcription start site region 43014	1438 bp upstream
Tssr43015	transcription start site region 43015	1415 bp upstream