rs28269110 SNP Detail

Summary

• ID
  rs28269110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127597323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGATG GAAGACTATG
  TGGAAGTGTA CATCAAATAA ACCCTTCCCG CCCCAAGTTT TCATGTTTCA CTACAGCAAT
  AGAACCCCCA CTAAGCCAGG CATCAACACA GTGTCCAACA AAAAGGAGCT GAGGCGGGGT
  CCCCATTCTT CACAATTCTA GAGTCTCAGA GGTGTCAATA AAAATAATCA CTTAGTGGCT
  Y
  AGCGTTCGCA CTGATGGCAC GTGAAGGATT TGGCTCCAAG GGAAAGTGTA TTTTGTTAGG
  ATGCAGCTGT GCTCTCCGCT GCTCTACTGC TCGCTTCGTT TACGGAAAGA AGGGTAATAA
  GGTTCTACAT GCCACTGCAA GGCCCGGGAG TGCTGCAGAC ACGGCCCAAT GGATAAGAAC
  ACTGGCTGCT CTTGCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627937	NES09008388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28269110					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627937	NES09008388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127597323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp1	nephronophthisis 1 (juvenile) homolog (human)			Intron
				mRNA-UTR
Rr564596	regulatory region 564596			1763 bp proximal
Tssr26143	transcription start site region 26143			314 bp downstream