rs28269104 SNP Detail

Summary

• ID
  rs28269104
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCTTAT AGCAGGGTCA
  TGGTGATTAA GGAGCCAGCT GACAGAGGGT CACACAGAAG GACTGTACCT CTTCTGGACA
  CTGAAGGGTC CACTTCAACA CCTTTTTCGT AAGGAGTGCC GCCATTCAAG AAGAGTTCGT
  ATGTTCTAGG AAAGAACAGT ACATGTGACA GGTCCTTGTC ATGGGCATTT ATTTGTCAAC
  K
  AGACTCTGCC AGGAATGAAG TTATTCATGG ACATCTTACT AAACTCATGG GTAAATCAGA
  GTCAGGATGC AGACTCTTCT ATGAGGTAAC AACTCAACAG ACTCTCTCCT AAGCACAAAC
  TGCAGGAAGT GTGGTGTCCA CATGGAGAGA AGGAAGATTC TGATGTCACT AAAATGATTT
  GACTTTAATG GTATGTAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37627931	NES09008318	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T		T	T	T		T	T		T
ss45221946	mCV22279943	ABI	CRAMUS_MOUSE	f	SNP		T	G				T
ss147540708	ENSMUSSNP5353972	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss320500678	CHEV_2_127581960	CHEVERUD	SCREENING_POP	f	SNP											T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28269104					SNP	T	T	G	T	G	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627931	NES09008318	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598144 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	942 bp proximal
Tssr26143	transcription start site region 26143	506 bp upstream