rs28269102 SNP Detail

Summary

• ID
  rs28269102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT AATGATACAA TGATAACTAA
  Y
  GTCCTCTCCT CCTTGCTAGG GTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627928	NES09008323	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		T		C	C	C	C	T
ss45349345	mCV22279967	ABI	CRAMUS_MOUSE	f	SNP	C	C	T			T		T
ss147540748	ENSMUSSNP2911435	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28269102					SNP	C	C	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627928	NES09008323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598792 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	294 bp proximal
Tssr26143	transcription start site region 26143	1154 bp upstream