rs28269100 SNP Detail

Summary

• ID
  rs28269100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127600028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGTGCTA TACAGTTTGG GAACAGTGTC AAATCACAGG
  ATCCTACACG GCATTTTGAA GCTTTGTCTT ACAGGGGAAT GGACTAGAGG AATCAGTAAC
  K
  CAAGGATCCC TTTCCTCAGC CCCCACGCCA GTTGCCAGGA TCAGTGGGGC TCACCTGTCT
  CCAATGCCCT ACCCATCTAT CCTGAAGATG TAACGGGAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627926	NES09008254	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	T		G	G		G	G	G
ss45375436	mCV22280251	ABI	CRAMUS_MOUSE	f	SNP		G	G					T
ss147540773	ENSMUSSNP3761936	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28269100					SNP	G	G	G	G	G	G	T	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627926	NES09008254	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127600028 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	467 bp distal
Rr564597	regulatory region 564597	1203 bp proximal