rs28269022 SNP Detail

Summary

• ID
  rs28269022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127672509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGTCAA ATAAAGTGTG
  AAGAGAAGAG GTGGCAAGCT CTATCTGCAT TTTAAATGTC TTCTTTGTTC CTTCACAAAA
  AGGAGCAGGG CTGGAACCAT AAACAGTAAT GAGTTCAGAA GTTACAGCAA GTAAGGGTGA
  GAATAGTATG TGTACAACTT TGGAGAGAGG ATACATGGCA ATTAACTGTA TTCTCAGTAT
  R
  CATCAAGTTG AGAAACAACC ATAGGTTTTT AAACTGAGAA ATGATAAGAT TAGGAGAAAA
  AGAATTTAAA AGTAGTATTT TGGTAGATGA CCAGAAAACT ATATCTCAAA ATATATTTCA
  CTGGCAAACT GAAATGATCA TTCAGAGAAA CTGCAATGGT TTTCTCATAA TTTAGTAGAG
  ATTTTAGCAA TTTATTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627847	NES09005843	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28269022					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627847	NES09005843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127672509 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12232	CpG island 12232	841 bp proximal
Rr397289	regulatory region 397289	1186 bp upstream
Rr564601	regulatory region 564601	595 bp proximal
Rr564602	regulatory region 564602	1260 bp proximal
Tssr26147	transcription start site region 26147	1228 bp downstream