rs28269019 SNP Detail

Summary

• ID
  rs28269019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127674450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGATC TCCACATGCA
  TGCCGTGGCA CATACTCATA TAACAAATGA GGAAACCACA ATCATTATGT CTGGTTCACG
  AATGAAGACA AATAGCCATG TATATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTCCATCCA GAGTTTTATG GGATCCCATG CCTTTGGCCT CTGCCACACT TGGTTCACAT
  R
  AAGGCACACC CACACGTATT TGTAAAATAT TCATAGTAAT TTTAAAGAGT CCGGAAGTCC
  AAGAATAAAT ATTTAACATG TTCATGTGCC CTGAGAGTGA GTTGAGAAAT AATCTAGTCT
  TCCCTGCTTC TTGAGTTTTA ATAACTTCCC ACTTTGCCTC TCTAGGGTCA CTTGACCAAA
  GCAAGTAGAA CATAAAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627844	NES09005755	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28269019					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627844	NES09005755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127674450 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	665 bp upstream
Cpgi12232	CpG island 12232	454 bp distal
Rr397289	regulatory region 397289	454 bp downstream
Rr564601	regulatory region 564601	682 bp distal
Rr564602	regulatory region 564602	175 bp distal
Rr564603	regulatory region 564603	440 bp proximal
Tssr26147	transcription start site region 26147	655 bp upstream