rs28269018 SNP Detail

Summary

• ID
  rs28269018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127674656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCACAC GTATTTGTAA
  AATATTCATA GTAATTTTAA AGAGTCCGGA AGTCCAAGAA TAAATATTTA ACATGTTCAT
  GTGCCCTGAG AGTGAGTTGA GAAATAATCT AGTCTTCCCT GCTTCTTGAG TTTTAATAAC
  TTCCCACTTT GCCTCTCTAG GGTCACTTGA CCAAAGCAAG TAGAACATAA AAGACTCATG
  Y
  GATTACTACC TTCCTGTTTC TAAAGGTCCT GGGAGTTTTT CAGCTCCTTC AAGTTGATAA
  AAAAGATATT GCAGCTTCTG GACAGATAGA CATTTTCTAA CCTAGAGAAA AGAATTATGA
  GTGATTTCCC ATTTGATTTC CTAGAATCAT CTAACTAGAG GAACATTCCT GACATGTCTT
  TATAGCTGCA CACGAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627843	NES09005756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28269018					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627843	NES09005756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127674656 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	871 bp upstream
Cpgi12232	CpG island 12232	660 bp distal
Rr397289	regulatory region 397289	660 bp downstream
Rr564601	regulatory region 564601	888 bp distal
Rr564602	regulatory region 564602	381 bp distal
Rr564603	regulatory region 564603	234 bp proximal
Tssr26147	transcription start site region 26147	861 bp upstream