rs28269017 SNP Detail

Summary

• ID
  rs28269017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127674834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGACAGAT AGACATTTTC TAACCTAGAG AAAAGAATTA
  TGAGTGATTT CCCATTTGAT TTCCTAGAAT CATCTAACTA GAGGAACATT CCTGACATGT
  Y
  TTTATAGCTG CACACGAAAA TATTGTCTGT GGCCATGATA TTGGCAGAAT TGGTAAACAC
  CACTAGAGGG AGTTCCAGGT TCTTGCATTC CTCGTAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627842	NES09005758	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T		C	T	C	C	C	C	T	C
ss45277807	mCV22597291	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss147542403	ENSMUSSNP5826371	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28269017					SNP	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627842	NES09005758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127674834 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	1049 bp upstream
Cpgi12232	CpG island 12232	838 bp distal
Rr397289	regulatory region 397289	838 bp downstream
Rr564601	regulatory region 564601	1066 bp distal
Rr564602	regulatory region 564602	559 bp distal
Rr564603	regulatory region 564603	56 bp proximal
Tssr26147	transcription start site region 26147	1039 bp upstream