rs28269016 SNP Detail

Summary

• ID
  rs28269016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127674849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCATGCGA TTACTACCTT
  CCTGTTTCTA AAGGTCCTGG GAGTTTTTCA GCTCCTTCAA GTTGATAAAA AAGATATTGC
  AGCTTCTGGA CAGATAGACA TTTTCTAACC TAGAGAAAAG AATTATGAGT GATTTCCCAT
  TTGATTTCCT AGAATCATCT AACTAGAGGA ACATTCCTGA CATGTCTTTA TAGCTGCACA
  Y
  GAAAATATTG TCTGTGGCCA TGATATTGGC AGAATTGGTA AACACCACTA GAGGGAGTTC
  CAGGTTCTTG CATTCCTCGT AGATAGTAGC AAGCAAAGTA GATTAAGAAT ACACTTCCAA
  TGTTTGGCTG CTAACATCTG CCTCTATTTG TAAGGCTCTG GCAAGGCCTC TCAGGAGACA
  GACATATCAG GCTCCTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627841	NES09005760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28269016					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627841	NES09005760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127674849 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	1064 bp upstream
Cpgi12232	CpG island 12232	853 bp distal
Rr397289	regulatory region 397289	853 bp downstream
Rr564601	regulatory region 564601	1081 bp distal
Rr564602	regulatory region 564602	574 bp distal
Rr564603	regulatory region 564603	41 bp proximal
Tssr26147	transcription start site region 26147	1054 bp upstream