rs28267769 SNP Detail

Summary

• ID
  rs28267769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153265552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTAACTGCT GTGGCCATAG ACTGCAAACA CACGGAAGAA
  ACTGGAAACC CAAACCATTA TGTAAATATC CAGAATTAAA AATCTCAGGG ACCAGTGCAC
  R
  CTATTAGCAT TTTTAAAAGC CCCTAGAAGC AACTTTACCT AAGTGTGATC TAGCCATACA
  ATAGAAGACT CGGCCTTAAA ATGAATGAAC TTTAGATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37559798	NES08910671	PERLEGEN	MM_PANEL2	f	SNP			G		A		G	G	G
ss45307879	mCV22912928	ABI	CRAMUS_MOUSE	f	SNP	A	G		A		G
ss147993420	ENSMUSSNP2152153	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28267769					SNP	A	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559798	NES08910671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153265552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567634	regulatory region 567634			1204 bp distal
Rr567635	regulatory region 567635			155 bp distal
Rr567636	regulatory region 567636			952 bp proximal
Tssr699	transcription start site region 699			1061 bp downstream