rs28267760 SNP Detail

Summary

• ID
  rs28267760
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153269936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCCTGGA TTATGGAACA GGACCCTGTC TCAAAAAAGG
  AGATAGAGTT TCTTTTACCT AATAAACCCA ATATATTTCA ACAACTAGTC AGTAACATGT
  K
  TCTGTTTTCA TGATAAGGCG TGTCTTCATG AGTGTGTCTT CTTGAGTGTC ACACACCTCT
  GCACCAACCC TCAATGTTCA GCAGCTGCGA GTGAACAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559789	NES08910514	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	T	G		T		G	G	T	G	T	G
ss45212656	mCV22912937	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss147993466	ENSMUSSNP2676300	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28267760					SNP	G	G	T	G	G	T	G	G	T	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559789	NES08910514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153269936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567636	regulatory region 567636			1414 bp distal
Rr567637	regulatory region 567637			359 bp distal
Rr567638	regulatory region 567638			517 bp proximal