rs28267759 SNP Detail

Summary

• ID
  rs28267759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153270360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTCACCAG TCTCCCAGAG TGAGCAGCAG CACCCAGATG
  GCTTCACAAA GAATGCCTCA GCCTATCCCA CCGTGGATCC CCCCAATACA CACTGGCAAG
  Y
  TATGCCCAAA GGAAATGCTC CCATATGGAA CCCTTGTTGG TCTGTCTTCC CAGGCCCACC
  ACTTTTTTTC TTTCTGCAGG CCAAGCACTA GTACTGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559788	NES08910515	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C			C	C	T	T	C	T	C
ss45322685	mCV22912940	ABI	CRAMUS_MOUSE	f	SNP		C	T					C	T
ss147993482	ENSMUSSNP2471357	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28267759					SNP	C	C	T	C	C	T	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559788	NES08910515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153270360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567636	regulatory region 567636			1838 bp distal
Rr567637	regulatory region 567637			783 bp distal
Rr567638	regulatory region 567638			93 bp proximal