rs28266428 SNP Detail

Summary

• ID
  rs28266428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163438165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGTGTC TGGGCTGGCA
  TTGATGGAGA AGGGGTGGGA TATCTCCTAT CCCTGCCGCA TCTCCGTTTC AGGACATGTT
  TTGGAAAATA TTCAGTCTGG CTAGGATCCA AAGCCCCTGG GAACAGACAG GACATCCTGT
  CCCTCCAAGC AGCCGTGCTG ACTCAGGAAG ATCAATGTGT GACCACAAAA ACACAGCTGG
  Y
  TCTGACCTCT TCTGGGAAAT CTACCCGGCC AAACCCATTC AAAGACCCGG ATCCTTCCTT
  CTAGGGCCTG AGCCTGGGCT CTTGAGCAGA AGGTGGCATG CAGAGAAAGA AGACTCTGGC
  ACTTGAGGCA TGCCAGGCCA GGGGGTCACA GGCTTCACAC GACCCTATGA TTGAAGTCAG
  AGATCTCTCT TGTGCTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37520962	NES08879942	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28266428					SNP	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520962	NES08879942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163438165 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	1775 bp downstream
Rr397463	regulatory region 397463	1420 bp upstream
Rr569427	regulatory region 569427	1889 bp distal
Rr569428	regulatory region 569428	within coordinates
Rr569429	regulatory region 569429	1494 bp proximal
Rr569430	regulatory region 569430	1625 bp proximal