rs28264366 SNP Detail

Summary

• ID
  rs28264366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163140053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAATTG GGGGAGCCCC
  GAGACATGAA GTCAGGGGAT ACTGCTGGCT GATGTGGGGC AATGGCTAGG TACATGGGGT
  GAGTGGGGCA TCACCGGCAG AGAGAGCCAC ATAGGGAGAA GCAAGTCAAA GGATCCAGCT
  GTGGTGTCCC CATTCAGAGC TAAGCATGCA TCCACTCAAA TGAAGGTGTG GTGACACTTT
  W
  TGACAAGGTC CCTGAGAGTC ATCACAGTGT GCCTGAGGGG GATCATGGGA GCCCAGGTTT
  AGGTAATAGA GTCAGGACCT CCCAGAGACA AGAACATTTG AGCAGAGCCT TAAAACCTGA
  GGAGGAAGCT GGAGAGATGG CTCAGCAGTT AAGAGGACTG GCTGCTCTTC CAGAGGTCCT
  GAGTTCAATC CCCAGCACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37522000	NES08865871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs28264366					SNP	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522000	NES08865871	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163140053 () rs orientation: forward

Symbol	Name	Function Class
Rr569324	regulatory region 569324	199 bp distal
Rr569325	regulatory region 569325	247 bp proximal
Rr569326	regulatory region 569326	1948 bp proximal
Tox2	TOX high mobility group box family member 2	Intron