rs28263651 SNP Detail

Summary

• ID
  rs28263651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:161179545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACGAGT AGGGATGATA
  ATCTCATGAT AAAGATAAGA GAAAACTCTC ACGGATATAC CTATTCTATT GCAGGGATAC
  AAACTCGTTT GTTTTGGTTA AGACATACGG AGAGCACACA GTACACAGTG GAGGGTCCTC
  CATGGATGCC TTTTCTCCAC CCACACAGAT GCTGTGCATC TGCTCCAGTC CCTGGGTGAT
  R
  AAGTCTGGCA GGGAAAAACC ATCACCTACC TATTCTTGGC AGATGCCGTT GGAGAAGCAC
  AGAGCATAAA GACTAGCAAG AGCTGCTCCT TATCTCAAGT ACCTGCACTC AACCCTCATC
  CTATGGGGTG AGAATCACCA TTGCCACCAT AATTTAGACA CGAGGCACCG GAAACCCCAG
  GATGAGTCTT TTTCTCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37530875	NES08879152	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28263651					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37530875	NES08879152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:161179545 () rs orientation: forward

Symbol	Name	Function Class
Rr374179	regulatory region 374179	960 bp upstream
Rr569155	regulatory region 569155	1243 bp proximal
Rr569156	regulatory region 569156	1641 bp proximal