rs28263640 SNP Detail

Summary

• ID
  rs28263640
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:161180823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGAATG TGATGGGAGC
  AAAAACAGAT AAACGATTAC TACTCACACT ACTGCTTAAC ACCAGCATTT GTTCCCATCT
  GACATGCTCT AGTACAGTGC ATTGTCCTGT TCAGCGAGGT TTATACAGTC TCTTTTTTTC
  ACTGAAGAAA CACTGGGCAC TTACAATGTA TTAGCTAATG TGCTCTTCAG TAGCGCTCAA
  M
  GGAACCCTTG GCCTTACTTG CTGGGAGATG TTGAAGAAGA AATGGAACTA TCAGGGGTTT
  CAGTGTGCTG GGAGCCTACT AGGGAGACTG GTATTCAGGA AGTTAGATTC TGATTTTATT
  TTACTGTGAA GTTTTCTTCC AGCATTTCCT GAGCTGCAGT TGATTCCCTC TAGGGCGGGG
  CTAGGAGTGG GAGGGATGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37530864	NES08879134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28263640					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37530864	NES08879134	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:161180823 () rs orientation: forward

Symbol	Name	Function Class
Rr374179	regulatory region 374179	within coordinates
Rr569155	regulatory region 569155	within coordinates
Rr569156	regulatory region 569156	363 bp proximal