rs28263636 SNP Detail

Summary

• ID
  rs28263636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:161181587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCATCCC TGCATCCTGT
  GGTTTGCAGC ACCACCAGGG AAATCAGCGT CCTAGGAATG GTTGTTACCC GCCACTTGGA
  CAGGAAATGT CGCAGACAAA GCCTTGTTTT TCTGCTCCTG GAATTAAGGT TTAGAGGCAG
  CTGCAAGGAA ATCGATACGG AGCTGCTAAG CCCTTAATGA ACGACAGCAA AAGGCTGATC
  S
  TGTTGCCTAA AACAGCTTTT TTCAAAGCTG CTTGTCTTGG GCGAGTGTTA ACAAGAATTG
  ATCGAGTTCC TCTGAGGTGT GGTTTCCAGG GTGCTGTGGG CCAGTGAAAG GGAGAGTGCC
  GTGGACCTAG AGGCGGTTGC CATGGGTGCA AGTGTTGCTC TGCAGCTGAG TCCTTAGGTT
  ACCCAGGGCT AGTTGAGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37530860	NES08879086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28263636					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37530860	NES08879086	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:161181587 () rs orientation: forward

Symbol	Name	Function Class
Rr374179	regulatory region 374179	within coordinates
Rr569155	regulatory region 569155	within coordinates
Rr569156	regulatory region 569156	380 bp distal
Rr569157	regulatory region 569157	1477 bp proximal
Rr569158	regulatory region 569158	1998 bp proximal