rs28263634 SNP Detail

Summary

• ID
  rs28263634
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:161181997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCCAGG TTGCTAAGTC
  TGTATAAAAC TTTTCTGTCA CCCCACCCCC TTTTATCCTG GGATCTGGGC CAAAGCTCGA
  TAACTAAATG GGGCACAAAG CTCCAGCTTT AAGGAGGGGT AAACAAGTGT ACTAAGTCTA
  CATCCAGACC CCATGGGAGA AGTAAGGGTG GCAGTTACCC AGCTGCTGGC CTTAACTATC
  S
  TCTTATGAAG TCACTTCTGC TTAAATCTGA GCTTGTCTTC AGGAAACAAA TCTGTAACTC
  TATGGAGAAA AGAAACAACT TAGTTAATAG GGATGCACAG GACACCCCAG CAGTGAAATG
  TCACCTGGTT AATGCTACTG TCTAATGGTG CTATCATCCA TTGCTCCTCT AGAGGCAGGT
  GAAGCGTGGG TCACAGTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37530858	NES08879088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28263634					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37530858	NES08879088	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:161181997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12615	CpG island 12615	1726 bp proximal
Rr374179	regulatory region 374179	within coordinates
Rr569155	regulatory region 569155	12 bp distal
Rr569156	regulatory region 569156	790 bp distal
Rr569157	regulatory region 569157	1067 bp proximal
Rr569158	regulatory region 569158	1588 bp proximal