rs28263633 SNP Detail

Summary

• ID
  rs28263633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:161182064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAAGCT CGATAACTAA
  ATGGGGCACA AAGCTCCAGC TTTAAGGAGG GGTAAACAAG TGTACTAAGT CTACATCCAG
  ACCCCATGGG AGAAGTAAGG GTGGCAGTTA CCCAGCTGCT GGCCTTAACT ATCCTCTTAT
  GAAGTCACTT CTGCTTAAAT CTGAGCTTGT CTTCAGGAAA CAAATCTGTA ACTCTATGGA
  R
  AAAAGAAACA ACTTAGTTAA TAGGGATGCA CAGGACACCC CAGCAGTGAA ATGTCACCTG
  GTTAATGCTA CTGTCTAATG GTGCTATCAT CCATTGCTCC TCTAGAGGCA GGTGAAGCGT
  GGGTCACAGT TTCCTTGCCC ACAGGGCCTG GGCAGATGTT TCTCCATCTG TCAAGTAAGC
  ACCCGCTTTC TGCCTGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37530857	NES08879089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28263633					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37530857	NES08879089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:161182064 () rs orientation: forward

Symbol	Name	Function Class
Rr374179	regulatory region 374179	within coordinates
Rr569155	regulatory region 569155	79 bp distal
Rr569156	regulatory region 569156	857 bp distal
Rr569157	regulatory region 569157	1000 bp proximal
Rr569158	regulatory region 569158	1521 bp proximal