rs28262260 SNP Detail

Summary

• ID
  rs28262260
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164708818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGACA CTCACACACA
  CAGACACACA CTCACACACA CACACACACA CACACACTCA TACACTCGAG TCTCTAAGGG
  ACTTAGCTCC TCCTTTAACC CATCAATCTG TCACTATTTG GACCACACAA GAAGCTTGAT
  CAGCCGCAGG CTTTGTGTGC CTTTTCCCTA CCATACAGAG CTGTACTCTC ACGTGTCATC
  M
  CCTTAAGAGA GTCCCCTCGC AACATCTACC ATCTACATCA TTGTGTTTGC TTAATTTCTG
  TTTTTTCCTT TTTTTTTTTT TTTTTTGAGC TGGTCTCATT TGACCCAGAC TAACCTTGAA
  CTCTCTGTGT GAAAGGAGAT GACTCTGAAC TTCCTCCTGC CCCCACCTTC CCCTCCCAAC
  CGCTAGGGTC TCGGGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515992	NES08882421	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262260					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515992	NES08882421	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164708818 () rs orientation: forward

Symbol	Name	Function Class
Gm75526	predicted gene, 75526	within coordinates
Rr374207	regulatory region 374207	within coordinates
Rr569739	regulatory region 569739	within coordinates
Rr569740	regulatory region 569740	839 bp proximal
Rr569741	regulatory region 569741	1530 bp proximal