rs28262258 SNP Detail

Summary

• ID
  rs28262258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164709059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TCTTGGTCCT TTACATCCTG
  R
  GCCTTCCTGT CTACTCCGAG CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515990	NES08882390	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G		A	G	G		G
ss148232413	ENSMUSSNP6676336	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			G
ss320606973	CHEV_2_164692639	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262258					SNP	A	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515990	NES08882390	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164709059 () rs orientation: forward

Symbol	Name	Function Class
Gm75526	predicted gene, 75526	within coordinates
Rr374207	regulatory region 374207	within coordinates
Rr569739	regulatory region 569739	within coordinates
Rr569740	regulatory region 569740	598 bp proximal
Rr569741	regulatory region 569741	1289 bp proximal