rs28262242 SNP Detail

Summary

• ID
  rs28262242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164715793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGTGTA AGTCATGTTC
  CTTTAAAAAG CAGCTTAAAA GCCAGATGCT GATGACAAAC ACCTTTAAAC CCCACCACTC
  AGGAGGAAGA GGCAGATGGA TCTCTGTCAA TTCGTGGTCA GCCTGGTCTA CAGAGTGAGT
  TCCAGGACAG CCAGGACTAC ACAAAGAAAG CCTGTGTCAA CAAACTTAAG TGTCCTAGGA
  R
  CCCTTTAGCT GTGAAAACCG GATGGTGGCC TCCTCTCCCT CTTCTTGTAG GATGTAGTTT
  TTTATGAGCT TAGAGTTTCA GGAGCTCCTA GCTGTCACTG GGTGTCCTCC TTTGGAGATG
  TCTGGAATTT AACTCTGCAG GCTCAGCCTC TCTGGGTGTA AACATGTTGG CTATTGACTG
  CAGTTGAGAA ATGGGTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515974	NES08882196	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262242					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515974	NES08882196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164715793 () rs orientation: forward

Symbol	Name	Function Class
Gm75526	predicted gene, 75526	within coordinates
Rr569744	regulatory region 569744	1684 bp distal
Rr569745	regulatory region 569745	22 bp proximal
Rr569746	regulatory region 569746	592 bp proximal
Rr569747	regulatory region 569747	1965 bp proximal