rs28262059 SNP Detail

Summary

• ID
  rs28262059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164793456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT CAGCCAAGCC ACTTCATAGG
  Y
  GAACTTAGTT AGGTGTGTCA CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515786	NES08880406	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C		C	T		T	C	T		T
ss148233645	ENSMUSSNP5890540	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320607206	CHEV_2_164777036	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262059					SNP	T	T	C	T	C	C	C	C	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515786	NES08880406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164793456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1037 bp distal
Cpgi12680	CpG island 12680	295 bp distal
Cpgi12681	CpG island 12681	1578 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	403 bp proximal
Rr569777	regulatory region 569777	1087 bp proximal
Rr569778	regulatory region 569778	1894 bp proximal
Tssr21691	transcription start site region 21691	375 bp downstream
Tssr21692	transcription start site region 21692	315 bp downstream
Tssr21693	transcription start site region 21693	887 bp upstream