rs28262049 SNP Detail

Summary

• ID
  rs28262049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGCCC ATTACAGGGC
  CCCTTCCTTA CTGCCCGCAC GTGGCCAGCC CTGCCTGCAA CGCTGGACTC CGCCTTTGAG
  GATCCGCAGA CCAAGAGGGT TTTCTTCTTC TCTGGTTAGT TTGTGCCCCT CTAGCTCATC
  GATCCCTCAG TATCCGTCAG CTTAGGACAG ACACCTAGTG TAACCCGTGA AACTGCGACT
  M
  CAAAAGAGCG CCCCTGCCCA GCTGATAAGA TTTGACATTG GGGGGACGGA CGGACGGACG
  GACGGTACTG AATTGCAATT CCCCTTGAGT AGCTCTGATA CTTAGCTTCT CTGGCTCCTG
  CCTCCTGCCC TTCAAAGAGA CTGTGCCACA CCTTAGTGTC TACTGACCCT TCTCTTCCGC
  AGGACGTCAA ATGTGGGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515776	NES08880383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262049					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515776	NES08880383	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12680	CpG island 12680	1840 bp distal
Cpgi12681	CpG island 12681	33 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	1121 bp distal
Rr569777	regulatory region 569777	437 bp distal
Rr569778	regulatory region 569778	349 bp proximal
Tssr21691	transcription start site region 21691	1920 bp downstream
Tssr21692	transcription start site region 21692	1860 bp downstream
Tssr21693	transcription start site region 21693	647 bp downstream