rs28261182 SNP Detail

Summary

• ID
  rs28261182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCC TCTTCTTTCT GTCTGTCACC CTGTTCCTCC CAATGAGGGT
  GCTGGGAACA GAACTCTGGT CTTTTGCAAG AACAGCAAGT ACTCTTGAAC CACGGAGCCA
  TCTCTCCAGC CCCAGAAACA TTTTCAAAAG ACTGTACCAA GATACTTGAC TACAAGAAGG
  Y
  ATACCAGGCC ACTGGGCGGA AAGAGAACAT TTCCATCTTG TCAATCATCC CTAACTGAAT
  CTCCATAGGA CGTGCTAGGA ACCTGGTAGA GCAATTCTGA CCCTGATTCA GAAGGCCACA
  TGGAAGAGGA TCTCCAGAAC GGCTCTGAAA AGGCGAAGAG AAGGTCCTGC CCCAACGGAT
  GGAGCACCGT GGAATAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37829501	NES08707796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
ss148344075	ENSMUSSNP4546276	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs28261182					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829501	NES08707796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333211 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1538 bp proximal
Rr572142	regulatory region 572142	1641 bp proximal