rs28261181 SNP Detail

Summary

• ID
  rs28261181
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTGTCA ATCATCCCTA
  ACTGAATCTC CATAGGACGT GCTAGGAACC TGGTAGAGCA ATTCTGACCC TGATTCAGAA
  GGCCACATGG AAGAGGATCT CCAGAACGGC TCTGAAAAGG CGAAGAGAAG GTCCTGCCCC
  AACGGATGGA GCACCGTGGA ATAGTTGTCT CAGCTTTGAA AACACAGTGA TACTGGATTA
  W
  AATGATGGGC AGAGAGAAAC GAACAGCTTT CAACCCAGCC TGGCCCGTGT GGCCCATGTG
  GCCCGTGTGG CCCGGCGTAA AAAGGTGGTT TACATCAGCT TTTTGGGTCC AAAGGGAGAG
  GAGGGGGGCA GTGAATGGAA TGCTGGGATA GGCAGCGAAG AGCCTGGGGG AGGGGGCACA
  TTGGATCACC CCAGGCGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss37829500	NES08707797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T		T	T
ss148344082	ENSMUSSNP5212098	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs28261181					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829500	NES08707797	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333445 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1304 bp proximal
Rr572142	regulatory region 572142	1407 bp proximal