rs28261178 SNP Detail

Summary

• ID
  rs28261178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174335159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGACTCA CTACTGTTAT
  CAACTCTCAA TGTTGTGTGC ACTGTCAGGG ATAGAGCTGT CTTAATAAGA GTTAATTGAG
  GGTTGCTATT AATGTTATTG TTAAAAGTGT GGTGTTTTCG AGGAGCTGAT ATTGTGAAGA
  GAACAACTTA TGTTGTTATG CTATCATCTT TTACTCGGGA CAAATTCTCT ATCATGACGT
  Y
  GAGAAAGTAC TAGAAGGAAA TTGACATGAA CTTTCAACAC TTCCCATGCC TGTTAATCAA
  GACTAATGGT GACCTTTACA TAAAGGACAT TGCACGAGGC GTTCATTAAA GAGAAGGGCT
  TAGCTGTCGA AACTTTCTCC TTTTCAAATT TCTTCATGAA GTATAATTAA TGAAATGCCA
  CATTTATTAA ATTTTAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37829497	NES08707782	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs28261178					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829497	NES08707782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174335159 () rs orientation: forward

Symbol	Name	Function Class
Rr374314	regulatory region 374314	1600 bp upstream
Rr572141	regulatory region 572141	194 bp distal
Rr572142	regulatory region 572142	286 bp distal