rs28261175 SNP Detail

Summary

• ID
  rs28261175
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174335518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATAATT AATGAAATGC
  CACATTTATT AAATTTTAAG GAGTTGCGTA GAGGAACAGA GGAGATCATA AAATGAGGTG
  GGTTGGTAGC ATTTTGAGTA CAGAAAGGCA TTCGAATGGC ATATTTAATA TTTGATATAG
  GCAACAATAT CGTAACAGAA GGATCAAATA ATCTCTCGGC TCAACCGCAT GAGAAGAATA
  W
  GCACTTCAGA AGAAAGACTA TCAGGCATAG AAGGGAAGCA AGCTCCAACA AGGCAGAACA
  GTTGCTATGT TTGTCAGGGT GAAGTGTGGA AGCTGAGAGG TCCCTCTGGC TCATTAGCTC
  ACGCAGCTCT CGTGACATGG CTATAGAGTG GGTAGCAGGA AATCTCTTTC CTTCAGTTCC
  TTAAAAATAC TTCCAAGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37829494	NES08707785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs28261175					SNP	T	T	T	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829494	NES08707785	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174335518 () rs orientation: forward

Symbol	Name	Function Class
Rr374314	regulatory region 374314	1241 bp upstream
Rr572141	regulatory region 572141	553 bp distal
Rr572142	regulatory region 572142	645 bp distal