rs28258094 SNP Detail

Summary

• ID
  rs28258094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:122785674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAATG GTTAACAGTT
  ATTACTCAGA ACAAAGAAGC CATTGTCTGT ACCCCTGATG AAGGCCATCG GGGAGCAAAA
  TAAGATCTGA AGTGTCAGCA CACTGGCTGG TGCCACCAGA ACTGCCACTA CTATCATGCC
  AGAAAGAGTC TCTACAGTCC CTGCTTACTT AGAGCTATCT TTTGATTCAG AGTCAGAGAC
  Y
  GTGTCCTTGG CTGCAAGTGA TCCTAAAGTA AGTCAGTTAG GAATCTGAAT GCCTTTGCCT
  ACAAATAACA GAAAACCTGG CTGCAATGAC ATTAAAAAAA AAAAAAATGT TTTAATGGCT
  CAATATCAAA GCCAGTATCT TCTGACACCC ACGCCACCCC CCTCCATCCC TGTTACTTTT
  TTTGTTTTGT TTTGTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37745413	NES09191924	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T		T	T	T	T	T	T	T
ss45643893	mCV22632909	ABI	CRAMUS_MOUSE	f	SNP		C				T		T
ss147360736	ENSMUSSNP452587	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28258094					SNP	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37745413	NES09191924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:122785674 () rs orientation: forward

Symbol	Name	Function Class
Gm69594	predicted gene, 69594	within coordinates
Rr598994	regulatory region 598994	within coordinates
Rr598995	regulatory region 598995	369 bp proximal