rs28258091 SNP Detail

Summary

• ID
  rs28258091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:122787889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTTGTT CTCTCAAGCT
  GTTTCGGGCA AACAGTCTGC GACAGTAACA CACACTGTCC AAGCATATGA AGGTGGCACC
  GTTGAGGACT GTCCAGAGAT AATGACAGAC GTACACTATG CCTAGACTTT TTGAATGCTC
  AATATCAGCA CATACCCTTC TCTCTATGCT TGCACTTCAA AAACTAAAGC AACCCCGAAG
  S
  CTCAAACAAT TCTTTTATAA CCTAAAGAGT AAGCCCCACA TCCACCTTCT ACCCTAAAAC
  TGGAATCATT CCATCCAGCA AGGAGCCCAA GATCACCAGA TAACATTCCT TCAGGCCTGT
  AGTGACTCCA TCTCTGTGTT CTGTTGCTGT GATAGTTGGA ATAAAAAATG ACCCCATAAG
  CTCATGGGGA CTGGCACTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37745410	NES09191852	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28258091					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37745410	NES09191852	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:122787889 () rs orientation: forward

Symbol	Name	Function Class
Gm69594	predicted gene, 69594	within coordinates
Rr598995	regulatory region 598995	1599 bp distal