rs28257452 SNP Detail

Summary

• ID
  rs28257452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:101412633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGTTC CAGGACAGCC
  AGGGCTACAC AGAGAAACCC TGTCTCAAAA AACAAAACCA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAC AAAACCAAAA AAAAGTATCG CTATTTTAAT TCAGAGAAAA TAAGCCAATT
  AACTGAGATC ACATGGTCAG GCACAGAGAG TCTGACCAAT ACTTGCTCCA GACTTGCTGT
  R
  CACTCTGCCT AGGACTCTGT AGAGGAATAC AGGATGGGGA ACCCTCAGAA GTTGCCCAGC
  TAGTGAAAGA TAAACACAGG AAAGAAATAC CTAGACAAAT CTAAGGTTTG AAATGCAAGT
  TTAGGAATTT TTTTTCTTTT TAATCAAAAA GAAAGTTAGG CGATAAACCT AGGATCTGGC
  TGTGAGAATG ATGTTTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37281978	NES08547417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323833355	CHEV_11_101383121	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28257452					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37281978	NES08547417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101412633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Brca1	breast cancer 1, early onset			Intron
				Noncoding-Transcript-Variant