rs28256308 SNP Detail

Summary

• ID
  rs28256308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117839233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCAATA CTGACGGTAC
  CCTCCTCCTT CCTCAAAAGG TGGGGCACAG GAAAGAGGTC TCCTTTTGAA TACAGAAACT
  GGGAACGTGA AGGCAGATGT GCCCTGGAAC CTGCTTTTCC CTGCCTGTTC CGGCTACTTA
  TTCCTGCCTC TGTCCTAGGC TAGGTTACCT CTGATCACCG GAGTCCTCTG CAGAATCACA
  M
  CTTCACAGGT GGCTTGCCCA TTCCTCCACC TATACTTAGG AGTAGATGCC ATCTTTTCAG
  CATCCTCCCC TGGAGACTCG CTTGCGGTTC TCACCTCCTT ACATACCAAA TCTGTAACTG
  ACTCCACTGA GCTGGCCTTC AGTCTCAGCT TCCTTTTCTC TTTTCTTGTG AATGGGAAAG
  TAGTTAAAAT CAGCCACCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690432	NES09219754	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28256308					SNP	A	A	C	A	A	A	A	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690432	NES09219754	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117839233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034E10Rik	RIKEN cDNA 9530034E10 gene			within coordinates
Rr598274	regulatory region 598274			1460 bp distal
Rr598275	regulatory region 598275			616 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr38645	transcription start site region 38645			932 bp upstream