rs28256298 SNP Detail

Summary

• ID
  rs28256298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117840498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTGCGT GCGTGCATGC GGTGTCTGGC TGCATAGCCC
  CTGCCCTTTC CCCAGGGCTC TTGACAGGAA TCTTCTTTAT TTTTATTCAT ATGAGACAAG
  R
  TCGCATGGAT CCCAGGCTGG CCTTGAATTC AACATGCACA CTCATGTGTG TGTAGGTGAA
  CGCGCTTATA AAAGTCAGAG GAGGACTGGG CAGCTTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690422	NES09219728	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G		G	A	G	G		G		G	A	G		G
ss45690531	mCV24295827	ABI	CRAMUS_MOUSE	f	SNP		A	A					G
ss147296191	ENSMUSSNP4659527	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A												G
ss321280925	CHEV_4_117655906	CHEVERUD	SCREENING_POP	f	SNP													G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28256298					SNP	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690422	NES09219728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117840498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034E10Rik	RIKEN cDNA 9530034E10 gene			within coordinates
Rr598275	regulatory region 598275			106 bp distal
Rr598276	regulatory region 598276			1746 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr38645	transcription start site region 38645			322 bp downstream