rs28256297 SNP Detail

Summary

• ID
  rs28256297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117840533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGCCC AGGCCCAGCT
  CTCTCTCCTA CAGACCTTAT CGTAGTCGAT GCCTTATTCT TAAAGGCTCT TGCGTGCGTG
  CATGCGGTGT CTGGCTGCAT AGCCCCTGCC CTTTCCCCAG GGCTCTTGAC AGGAATCTTC
  TTTATTTTTA TTCATATGAG ACAAGGTCGC ATGGATCCCA GGCTGGCCTT GAATTCAACA
  Y
  GCACACTCAT GTGTGTGTAG GTGAACGCGC TTATAAAAGT CAGAGGAGGA CTGGGCAGCT
  TGCCTTGTCA GCCTGCCTTA TTTCTCTGAG ATAAAGTCTT TATTCCACCC AGTCTGGGAT
  CTGCAGCCTC CAATAAAACT GGAGTCAGCA GGTGTGTGTG CAGCTGTGCC TGGCTTTTGC
  CATGGATGCT GGAATCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37690421	NES09219729	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28256297					SNP	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690421	NES09219729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117840533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034E10Rik	RIKEN cDNA 9530034E10 gene			within coordinates
Rr598275	regulatory region 598275			141 bp distal
Rr598276	regulatory region 598276			1711 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr38645	transcription start site region 38645			357 bp downstream