rs28252237 SNP Detail

Summary

• ID
  rs28252237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138947001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTATGGC TGACTCATAC
  AAGTCCTCTC TCTCTCATTC ACTTGTTCAC CATTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT TTCTCCATTA CCACCCACAC TGCTTCAAAA
  AGCTCTCCTG TGCTTATCTT GACACTTCCA TATCAAAGAA ACTTCTGTCA CCGAGATCTT
  R
  ATTACCAGCA CATTTTTCTC CTACAGCATG ATGGTGCATG TCTCTAATTG CATTTATTTT
  ATTGATGATG TCAGAGACAG TGTTTTGCTA TCTAGCCCCA GCAGGCCTGA AAACTTGCCA
  TGTAGATCAG ACTGGCTTTA AATGTGCAGC AATCTTCCTG TGCCTGCCTT TTGAATGATG
  GGGTTATATC ATGCAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37441861	NES08965457	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		G
ss320526192	CHEV_2_138930817	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28252237					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441861	NES08965457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138947001 () rs orientation: forward

Symbol	Name	Function Class
Rr566007	regulatory region 566007	1994 bp distal