rs28249625 SNP Detail

Summary

• ID
  rs28249625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153386774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGCACCA CCCCCGACTG GCCAGAGTGT GCCTCAGCAG
  GGCCGCCCTG CTTTCCCCAG CCCCTGCCCT GGTGGGAACT AACTCTAGAC ACAGAAAGTT
  Y
  CCCCAGTGTA GGTGCAGACT CCTCCATTGC TAAACTCGGA GAGCTCTGAG GAAGGTCGAT
  GCCAACTGTC TGCAGGGGTC CCGATACCAT CCAGGCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559652	NES08907667	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		T	C	T	T	T	C	T	C	T
ss45344613	mCV25321345	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss147996038	ENSMUSSNP6701054	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249625					SNP	T	T	C	T	T	C	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559652	NES08907667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153386774 () rs orientation: forward

Symbol	Name	Function Class
Gm75208	predicted gene, 75208	1063 bp upstream
Gm75218	predicted gene, 75218	192 bp downstream
Rr567674	regulatory region 567674	1206 bp distal
Rr567675	regulatory region 567675	573 bp distal
Rr567676	regulatory region 567676	3 bp proximal
Rr567677	regulatory region 567677	1892 bp proximal