rs28249623 SNP Detail

Summary

• ID
  rs28249623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153386874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCACCA CCCCCGACTG
  GCCAGAGTGT GCCTCAGCAG GGCCGCCCTG CTTTCCCCAG CCCCTGCCCT GGTGGGAACT
  AACTCTAGAC ACAGAAAGTT TCCCCAGTGT AGGTGCAGAC TCCTCCATTG CTAAACTCGG
  AGAGCTCTGA GGAAGGTCGA TGCCAACTGT CTGCAGGGGT CCCGATACCA TCCAGGCTTC
  Y
  AGAAGGATAC TAGGAAGGTT AGGCCACTTG CCTACAACAA ATTAAGTCCA AGAAGGGAGG
  GTACCCAGCC TTCTTGACTT CCCATGTCAG GGTGGAAAAC ATGCCATCTG CTCAGAGCTG
  CTGGTAGTGG AGGGTGGGGG TTGGGGTGGG AGAGAGTGGG GGGAGGGTGG CAGAGCATGC
  CTGACACCTA GAATCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559650	NES08907669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249623					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559650	NES08907669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153386874 () rs orientation: forward

Symbol	Name	Function Class
Gm75208	predicted gene, 75208	1163 bp upstream
Gm75218	predicted gene, 75218	292 bp downstream
Rr567674	regulatory region 567674	1306 bp distal
Rr567675	regulatory region 567675	673 bp distal
Rr567676	regulatory region 567676	within coordinates
Rr567677	regulatory region 567677	1792 bp proximal