rs28249622 SNP Detail

Summary

• ID
  rs28249622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGGGGTG GGAGAGAGTG GGGGGAGGGT GGCAGAGCAT
  GCCTGACACC TAGAATCCTC CCACAGCAGC AAGCAGGACA ACTTCTGACA GGGATGAGAA
  Y
  GAAAGGGTCT CTCGGGACAC CCCTCCCTCT CTGAGTCCTC ACCCTTACTG GCTCTCAAGG
  GCTCCCAATG TCCCTAAGAG ACTTCAAAGC AGGGAACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559649	NES08907671	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	C	T	C	C	C	T	C	T	C
ss147996042	ENSMUSSNP1593823	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249622					SNP	C	T	C	C	T	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559649	NES08907671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387113 () rs orientation: forward

Symbol	Name	Function Class
Gm75208	predicted gene, 75208	1402 bp upstream
Gm75218	predicted gene, 75218	531 bp downstream
Rr567674	regulatory region 567674	1545 bp distal
Rr567675	regulatory region 567675	912 bp distal
Rr567676	regulatory region 567676	73 bp distal
Rr567677	regulatory region 567677	1553 bp proximal